initiaö commit

1 files changed, 165 insertions, 0 deletions

diff --git a/environment.yaml b/environment.yaml
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+++ b/environment.yaml
@@ -0,0 +1,165 @@
+name: loci-l
+channels:
+  - anaconda
+  - pytorch
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=main
+  - _openmp_mutex=5.1=1_gnu
+  - alsa-lib=1.2.3.2=h166bdaf_0
+  - blas=1.0=mkl
+  - brotlipy=0.7.0=py39h27cfd23_1003
+  - bzip2=1.0.8=h7b6447c_0
+  - ca-certificates=2023.01.10=h06a4308_0
+  - cairo=1.16.0=h6cf1ce9_1008
+  - certifi=2022.12.7=py39h06a4308_0
+  - cffi=1.15.1=py39h5eee18b_3
+  - charset-normalizer=2.0.4=pyhd3eb1b0_0
+  - cryptography=39.0.1=py39h9ce1e76_0
+  - cudatoolkit=11.3.1=h2bc3f7f_2
+  - dbus=1.13.6=h48d8840_2
+  - einops=0.6.0=pyhd8ed1ab_0
+  - expat=2.4.8=h27087fc_0
+  - ffmpeg=4.3.2=hca11adc_0
+  - flit-core=3.8.0=py39h06a4308_0
+  - fontconfig=2.14.0=h8e229c2_0
+  - freetype=2.12.1=h4a9f257_0
+  - gettext=0.19.8.1=h73d1719_1008
+  - giflib=5.2.1=h5eee18b_3
+  - glib=2.68.4=h9c3ff4c_1
+  - glib-tools=2.68.4=h9c3ff4c_1
+  - gmp=6.2.1=h295c915_3
+  - gnutls=3.6.15=he1e5248_0
+  - graphite2=1.3.13=h58526e2_1001
+  - gst-plugins-base=1.18.5=hf529b03_0
+  - gstreamer=1.18.5=h76c114f_0
+  - h5py=3.7.0=py39h737f45e_0
+  - harfbuzz=2.9.1=h83ec7ef_1
+  - hdf5=1.10.6=nompi_h3c11f04_101
+  - icu=68.2=h9c3ff4c_0
+  - idna=3.4=py39h06a4308_0
+  - intel-openmp=2021.4.0=h06a4308_3561
+  - jasper=1.900.1=h07fcdf6_1006
+  - jpeg=9e=h5eee18b_1
+  - jsmin=3.0.1=pyhd8ed1ab_0
+  - keyutils=1.6.1=h166bdaf_0
+  - krb5=1.19.3=h3790be6_0
+  - lame=3.100=h7b6447c_0
+  - lcms2=2.12=h3be6417_0
+  - ld_impl_linux-64=2.38=h1181459_1
+  - lerc=3.0=h295c915_0
+  - libblas=3.9.0=12_linux64_mkl
+  - libcblas=3.9.0=12_linux64_mkl
+  - libclang=11.1.0=default_ha53f305_1
+  - libdeflate=1.17=h5eee18b_0
+  - libedit=3.1.20191231=he28a2e2_2
+  - libevent=2.1.10=h9b69904_4
+  - libffi=3.4.2=h6a678d5_6
+  - libgcc-ng=11.2.0=h1234567_1
+  - libgfortran-ng=7.5.0=h14aa051_20
+  - libgfortran4=7.5.0=h14aa051_20
+  - libglib=2.68.4=h174f98d_1
+  - libgomp=11.2.0=h1234567_1
+  - libiconv=1.16=h7f8727e_2
+  - libidn2=2.3.2=h7f8727e_0
+  - liblapack=3.9.0=12_linux64_mkl
+  - liblapacke=3.9.0=12_linux64_mkl
+  - libllvm11=11.1.0=hf817b99_2
+  - libogg=1.3.4=h7f98852_1
+  - libopencv=4.5.2=py39h2406f9b_0
+  - libopus=1.3.1=h7f98852_1
+  - libpng=1.6.39=h5eee18b_0
+  - libpq=13.3=hd57d9b9_0
+  - libprotobuf=3.15.8=h780b84a_1
+  - libstdcxx-ng=11.2.0=h1234567_1
+  - libtasn1=4.19.0=h5eee18b_0
+  - libtiff=4.2.0=hf544144_3
+  - libunistring=0.9.10=h27cfd23_0
+  - libuuid=2.32.1=h7f98852_1000
+  - libvorbis=1.3.7=h9c3ff4c_0
+  - libwebp=1.2.4=h11a3e52_1
+  - libwebp-base=1.2.4=h5eee18b_1
+  - libxcb=1.13=h7f98852_1004
+  - libxkbcommon=1.0.3=he3ba5ed_0
+  - libxml2=2.9.12=h72842e0_0
+  - lz4-c=1.9.4=h6a678d5_0
+  - mkl=2021.4.0=h06a4308_640
+  - mkl-service=2.4.0=py39h7f8727e_0
+  - mkl_fft=1.3.1=py39hd3c417c_0
+  - mkl_random=1.2.2=py39h51133e4_0
+  - motmetrics=1.2.0=py_0
+  - mysql-common=8.0.25=ha770c72_2
+  - mysql-libs=8.0.25=hfa10184_2
+  - ncurses=6.4=h6a678d5_0
+  - nettle=3.7.3=hbbd107a_1
+  - nspr=4.32=h9c3ff4c_1
+  - nss=3.69=hb5efdd6_1
+  - numpy=1.23.5=py39h14f4228_0
+  - numpy-base=1.23.5=py39h31eccc5_0
+  - opencv=4.5.2=py39hf3d152e_0
+  - openh264=2.1.1=h4ff587b_0
+  - openssl=1.1.1t=h7f8727e_0
+  - pandas=1.2.3=py39hde0f152_0
+  - pcre=8.45=h9c3ff4c_0
+  - pillow=9.4.0=py39h6a678d5_0
+  - pip=23.0.1=py39h06a4308_0
+  - pixman=0.40.0=h36c2ea0_0
+  - pthread-stubs=0.4=h36c2ea0_1001
+  - py-opencv=4.5.2=py39hef51801_0
+  - pycparser=2.21=pyhd3eb1b0_0
+  - pyopenssl=23.0.0=py39h06a4308_0
+  - pysocks=1.7.1=py39h06a4308_0
+  - python=3.9.16=h7a1cb2a_2
+  - python-dateutil=2.8.2=pyhd8ed1ab_0
+  - python_abi=3.9=2_cp39
+  - pytorch=1.12.1=py3.9_cuda11.3_cudnn8.3.2_0
+  - pytorch-mutex=1.0=cuda
+  - pytz=2023.3=pyhd8ed1ab_0
+  - pyyaml=6.0=py39h5eee18b_1
+  - qt=5.12.9=hda022c4_4
+  - readline=8.2=h5eee18b_0
+  - requests=2.28.1=py39h06a4308_1
+  - scipy=1.5.3=py39hf3f25e7_0
+  - setuptools=59.8.0=py39hf3d152e_1
+  - six=1.16.0=pyhd3eb1b0_1
+  - sqlite=3.41.2=h5eee18b_0
+  - tk=8.6.12=h1ccaba5_0
+  - torchaudio=0.12.1=py39_cu113
+  - torchvision=0.13.1=py39_cu113
+  - tqdm=4.65.0=py39hb070fc8_0
+  - typing_extensions=4.4.0=py39h06a4308_0
+  - tzdata=2023c=h04d1e81_0
+  - urllib3=1.26.15=py39h06a4308_0
+  - wheel=0.38.4=py39h06a4308_0
+  - x264=1!161.3030=h7f98852_1
+  - xmltodict=0.13.0=pyhd8ed1ab_0
+  - xorg-kbproto=1.0.7=h7f98852_1002
+  - xorg-libice=1.0.10=h7f98852_0
+  - xorg-libsm=1.2.3=hd9c2040_1000
+  - xorg-libx11=1.7.2=h7f98852_0
+  - xorg-libxau=1.0.9=h7f98852_0
+  - xorg-libxdmcp=1.1.3=h7f98852_0
+  - xorg-libxext=1.3.4=h7f98852_1
+  - xorg-libxrender=0.9.10=h7f98852_1003
+  - xorg-renderproto=0.11.1=h7f98852_1002
+  - xorg-xextproto=7.3.0=h7f98852_1002
+  - xorg-xproto=7.0.31=h7f98852_1007
+  - xz=5.2.10=h5eee18b_1
+  - yaml=0.2.5=h7b6447c_0
+  - zlib=1.2.13=h5eee18b_0
+  - zstd=1.5.5=hc292b87_0
+  - pip:
+    - contourpy==1.0.7
+    - cycler==0.11.0
+    - fonttools==4.39.3
+    - importlib-resources==5.12.0
+    - kiwisolver==1.4.4
+    - lazy-loader==0.2
+    - lpips==0.1.4
+    - matplotlib==3.7.1
+    - packaging==23.1
+    - pyparsing==3.0.9
+    - pytorch-msssim==0.2.1
+    - scikit-image==0.20.0
+    - zipp==3.15.0